PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g046980.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 867aa    MW: 94754.7 Da    PI: 6.3155
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g046980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.23.6e-152072351
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNr 51
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNr
  Csa04g046980.1 20 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNR 72
                    5678************************************************9 PP

2START191.15.6e-601753832205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aeea++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ ++tl vi  g  g+++l+
  Csa04g046980.1 175 IAEEALAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGIAARACGLVSLEPM-KVAEILKDRPSWLRDCRCVDTLSVIPAGngGTIELI 268
                     799*******************************************************.8888888888*****************999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p+   sss+vRae++pSg+li+p+++g+s +++v+hvdl+++++++++r+l+
  Csa04g046980.1 269 YTQMYAPTTLAAaRDFWTLRYSTCLEDGSYVVCERSLTSATGGPTgppSSSFVRAEMRPSGFLIRPCEGGGSILHIVDHVDLDAWSVPEVMRPLY 363
                     *****************************************9999999*********************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+ + ++k++va+l++ ++
  Csa04g046980.1 364 ESSKILAQKMTVAALRHVRQ 383
                     ***************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.4381572IPR001356Homeobox domain
SMARTSM003894.8E-91783IPR001356Homeobox domain
SuperFamilySSF466897.7E-131985IPR009057Homeodomain-like
CDDcd000867.93E-142086No hitNo description
PfamPF000469.3E-132172IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-142372IPR009057Homeodomain-like
CDDcd146862.67E-579117No hitNo description
PROSITE profilePS5084826.98165393IPR002913START domain
CDDcd088759.68E-76169385No hitNo description
Gene3DG3DSA:3.30.530.202.2E-22173379IPR023393START-like domain
SMARTSM002341.1E-63174384IPR002913START domain
SuperFamilySSF559613.71E-36174386No hitNo description
PfamPF018523.0E-57175383IPR002913START domain
PfamPF086702.3E-48720865IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 867 aa     Download sequence    Send to blast
MMMVHTMNRE SPDNGLDSGK YVRYTPEQVE ALERVYTECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRSFFLILRC REKQRKEAAR LQTVNRKLNA MNKLLMEEND RLQKQVSHLV  120
YENGHMKHQL HTASGTTTDN SCESVVVSGQ QHQQQNSNPQ HLQRDANNPA GLLSIAEEAL  180
AEFLSKATGT AVDWVQMIGM KPGPDSIGIV AISRNCSGIA ARACGLVSLE PMKVAEILKD  240
RPSWLRDCRC VDTLSVIPAG NGGTIELIYT QMYAPTTLAA ARDFWTLRYS TCLEDGSYVV  300
CERSLTSATG GPTGPPSSSF VRAEMRPSGF LIRPCEGGGS ILHIVDHVDL DAWSVPEVMR  360
PLYESSKILA QKMTVAALRH VRQIAQETSG EVQYGGGRQP AVLRTFSQRL CRGFNDAVNG  420
FVDDGWTPMG SDGAEDITVM INLSPGKFGG AQYGNSFLPS FGSGVLCAKA SMLLQSLSNQ  480
LESHSFIKNV PPAVLIRFLR EHRSEWADYG VDAYAAASLR ASPFAVPCAR AGGFPSNQVI  540
LPLAQTVEHE ESLEVVRLEG HAYSPEDMGL ARDMYLLQLC SGVDENVVGG CAQLVFAPID  600
ESFADDAPLL PSGFRVIPLE HKSTPNGASA NRTLDLASAL EGSTRQAGEA DPNGCNFRSV  660
ITIAFQFTFD NHSRDSVASM ARQYVRSIVG SIQRVALAIA PRPGSSISPI SVPTSPEALT  720
LVRWISRSYS LHTGAGLFGS DSQPSGDTLL HQLWNHTDAI LCCSLKTNAS PVFTFANQTG  780
LDMLETTLVA LQDIMLDKTL DESGRKALCS EFPKIMQQGY AHLPAGVCAS SMGRMVSYEQ  840
ATVWKVLEDD ESNHCLAFMF VNWSFV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ4412910.0AJ441291.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14 (ATHB-14 gene).
GenBankAY0997910.0AY099791.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds.
GenBankBT0003350.0BT000335.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504942.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLD7LH380.0D7LH38_ARALL; Putative uncharacterized protein
STRINGscaffold_402060.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42562653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein